Single-molecule detection of protein efflux from microorganisms using fluorescent single-walled carbon nanotube sensor arrays

TitleSingle-molecule detection of protein efflux from microorganisms using fluorescent single-walled carbon nanotube sensor arrays
Publication TypeJournal Article
Year of Publication2017
AuthorsLandry, MP, Ando, H, Chen, AY, Cao, J, Kottadiel, VI, Chio, L, Yang, D, Dong, J, Lu, TK, Strano, MS
JournalNature Nanotechnology
Volume12
Issue4
Pagination368 - 377
Date Published2017
Abstract

A distinct advantage of nanosensor arrays is their ability to achieve ultralow detection limits in solution by proximity placement to an analyte. Here, we demonstrate label-free detection of individual proteins from Escherichia coli (bacteria) and Pichia pastoris (yeast) immobilized in a microfluidic chamber, measuring protein efflux from single organisms in real time. The array is fabricated using non-covalent conjugation of an aptamer-anchor polynucleotide sequence to near-infrared emissive single-walled carbon nanotubes, using a variable chemical spacer shown to optimize sensor response. Unlabelled RAP1 GTPase and HIV integrase proteins were selectively detected from various cell lines, via large near-infrared fluorescent turn-on responses. We show that the process of E. coli induction, protein synthesis and protein export is highly stochastic, yielding variability in protein secretion, with E. coli cells undergoing division under starved conditions producing 66% fewer secreted protein products than their non-dividing counterparts. We further demonstrate the detection of a unique protein product resulting from T7 bacteriophage infection of E. coli, illustrating that nanosensor arrays can enable real-time, single-cell analysis of a broad range of protein products from various cell types. © 2017 Macmillan Publishers Limited, part of Springer Nature.

URLhttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85011676267&doi=10.1038%2fnnano.2016.284&partnerID=40&md5=65d6029453c5ef1c2351b55ebf377cdc